CAT #: 75000007
LymphoTrack® Software - S5/PGM™
The LymphoTrack Software – PGM/™ package provides bioinformatics data analysis and visualization of raw FASTQ files from the ThermoFisher PGM/S5™ when used with the LymphoTrack Assays.
The LymphoTrack® Assays – S5/PGM™ were designed to produce sequencing data that can be analyzed using the LymphoTrack® Software – S5/PGM™ package provided on the associated CD (catalog #75000007). This CD includes detailed instructions for installation and use of the software package, as well as three essential tools for analysis:
- LymphoTrack® Data Analysis – PGM/S5™ (Run with Microsoft Windows)
- LymphoTrack® Reporter – PGM/S5™ (Run with Microsoft Windows)
- LymphoTrack® Visualization – PGM/S5™ (Run with Microsoft Excel Macro)
The Ion S5™ or Ion PGM™ sequencing run of samples prepared with LymphoTrack® Assays – S5/PGM™ provide FASTQ files that can be easily processed into fully analyzed data using the LymphoTrack® Data Analysis – S5/PGM™ Application. This software package allows for clonality analysis of single or multiple target data (IGH FR1, IGH FR2, IGH FR3, IGK, or TRG), and additionally provides the somatic hypermutation status of samples run with the IGH FR1 assay. The data output can then be visualized in Microsoft Excel® and as a PDF using the LymphoTrack® Visualization application.
The following reports are generated:
- Read Summary
- Merged Read Summary
- VJ Sequence Frequency Graph
- VJ Usage
- VJ Usage Percent Graph
- VJ Usage Raw Graph
- VJ Sequence Frequency
- Unique Reads
For guidance with minimal residual disease (MRD) studies, please refer to the technical bulletin entitled ‘Study of MRD – Using LymphoTrack Assays’. Contact firstname.lastname@example.org to obtain the latest version of this document.
This product is for Research Use Only; not for use in diagnostic procedures.
This product is covered by one or more patents and patent applications owned by or exclusively licensed to Invivoscribe, Inc., including United States Patent Number 7785783, United States Patent Number 8859748, United States Patent Number 10280462, European Patent Number EP 1549764B1 (validated in 16 countries, and augmented by related European Patents Numbered EP2418287A3 and EP 2460889A3), Japanese Patent Number JP04708029B2, Japanese Patent Application Number 2006-529437, Brazil Patent Application Number PI0410283.5, Canadian Patent Number CA2525122, Indian Patent Number IN243620, Mexican Patent Number MX286493, Chinese Patent Number CN1806051, and Korean Patent Number 101215194.
Use of this product may require nucleic acid amplification methods such as Polymerase Chain Reaction (PCR). Any necessary license to practice amplification methods or to use reagents, amplification enzymes or equipment covered by third party patents is the responsibility of the user and no such license is granted by Invivoscribe, Inc., expressly or by implication.
©2020 Invivoscribe, Inc. All rights reserved. The trademarks mentioned herein are the property of Invivoscribe, Inc. and/or its affiliates, or (as to the trademarks of others used herein) their respective owners.
Thermo Fisher Scientific® and ION PGM™ and ION S5™ are trademarks of Thermo Fisher Scientific or its subsidiaries.